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BLAST ®Basic Local Alignment Search ToolMy NCBI[Sign In] [Register]Jump to Page ContentHomeRecent Results Saved StrategiesHelpNCBI/ BLAST HomeBLAST finds regions of similarity between biological sequences.more...The Basic Local Alignment Search Tool (BLAST) finds regions oflocalsimilarity between sequences. The program compares nucleotide orproteinsequences to sequence databases and calculates the statisticalsignificance of matches. BLAST can be used to infer functional andevolutionary relationships between sequences as well as help identifymembers of gene families.New Try SmartBLAST for an improved protein-protein searchBLAST Assembled GenomesFind Genomic BLAST pages:Enter organism common name, scientific name, or tax id.HumanMouseRatCowPig DogRabbitChimpGuinea pigFruit flyHoney beeChickenZebrafishClawed frog Arabidopsis Rice Yeast Microbes Basic BLAST Choose a BLAST program to run. ProgramProgram Description nucleotide blast Search a nucleotide database using a nucleotide query Algorithms: blastn, megablast, discontiguous megablast protein blast Search protein database using a protein query Algorithms: blastp, psi-blast, phi-blast, delta-blast blastx Search protein database using a translated nucleotide query tblastn Search translated nucleotide database using a protein query tblastx Search translated nucleotide database using a translated nucleotide query Specialized BLAST Choose a type of specialized search (or database name in parentheses.) Get faster protein results with a graphical view using SmartBLAST Make specific primers with Primer-BLAST Cluster multiple sequences together with their database neighbors using MOLE-BLAST Find conserved domains in your sequence (cds) Find sequences with similar conserved domain architecture (cdart) Search sequences that have gene expression profiles (GEO) Search immunoglobulins and T cell receptor sequences (IgBLAST) Screen sequence for vector contamination (vecscreen) Align two (or more) sequences using BLAST (bl2seq) Search protein or nucleotide targets in PubChem BioAssay Search SRA by experiment Constraint Based Protein Multiple Alignment Tool Needleman-Wunsch Global Sequence Alignment Tool Search RefSeqGene Search trace archives Search bacterial and fungal rRNA sequences with Targeted Loci BLAST Your Recent Results New! All Recent results... News SmartBLAST Use SmartBLAST for faster BLASTp search results in a graphical view. Wed, 29 Jul 2015 18:00:00 EST More BLAST news... Tip of the Day Using Tree View to Examine Relationships Between Sequences. The new Tree View option on the NCBI Web BLAST service presents a dendrogram or tree display that clusters sequences according to their distances from the query sequence. More tips... BLAST is a registered trademark of the National Library of Medicine. NCBI | NLM | NIH | DHHS Copyright | Disclaimer | Privacy | Accessibility | Contact | Send feedback
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