网站综合信息 cytoscape.org
    • 标题:
    • Cytoscape: An Open Source Platform for 
    • 关键字:
    • Cytoscape visualization interaction network software gene 
    • 描述:
    • Cytoscape Official Web Site 
    • 域名信息
    • 域名年龄:23年22天  注册日期:2001年11月29日  到期时间:
      邮箱:schwikowski  电话:+33.33145688620
      注册商:Register.com, Inc. (R71-LROR) 
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    cytoscape.org

    域名年龄: 23年22天
    注册时间: 2001-11-29
    注 册 商: Register.com, Inc. (R71-LROR)
    注册邮箱: schwikowski
    联系电话: +33.33145688620

    获取时间: 2014年10月29日 09:33:34
    Domain Name:CYTOSCAPE.ORG
    Domain ID: D80487322-LROR
    Creation Date: 2001-11-29T21:10:06Z
    Updated Date: 2014-10-01T17:11:15Z
    Registry Expiry Date: 2018-11-29T21:10:06Z
    Sponsoring Registrar:Register.com, Inc. (R71-LROR)
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    Registrant ID:7018146b0f131030
    Registrant Name:Benno Schwikowski
    Registrant Organization:Benno Schwikowski
    Registrant Street: 48 Rue des Arts
    Registrant City:Le Perreux-sur-Marne
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  • Cytoscape: An Open Sourc
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    • 相关信息
    网站首页快照(纯文字版)
    抓取时间:2016年11月14日 23:37:13
    网址:http://cytoscape.org/
    标题:Cytoscape: An Open Source Platform for Complex Network Analy
    关键字:Cytoscape,visualization,interaction network, software,genetic,gene,expression,protein interaction,graph,bioi
    描述:Cytoscape Official Web Site
    主体:
    CytoscapeNetwork Data Integration, Analysis, and Visualization in a BoxIntroductionDownloadCytoscape is an open source software platformfor visualizing complex networks and integrating these with any type ofattribute data. A lot of Appsare available for various kinds of problem domains, including bioinformatics, social networkanalysis, and semantic web. Learn more...Welcome LetterRelease NotesSample Visualizations3.x TutorialDevelopers TutorialNRNB and CytoscapeIntroduction to the National Resource for Network BiologyHow to Cite CytoscapeCytoscape project needs your support!Please cite the original Cytoscape paper when you use Cytoscape. This is critical to sustaining our federal funding.Shannon P, Markiel A, Ozier O, Baliga NS, WangJT, Ramage D, Amin N, Schwikowski B, Ideker T.Cytoscape: a software environment for integrated models ofbiomolecular interaction networksGenome Research 2003 Nov; 13(11):2498-504[Abstract] [PDF] [PubMed entry]Other articles and papers about Cytoscape are available here.Tweets by@cytoscape
    What Can You Do With Cytoscape?
    Biology
    Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
    Load molecular and genetic interaction data
    sets
    in many standards
    formats
    Project and integrate global datasets and functional annotations
    Establish powerful visual mappings across these data
    Perform advanced analysis and modeling using Cytoscape Apps
    Visualize and analyze human-curated pathway datasets such as
    WikiPathways,
    Reactome,
    and KEGG.
    Social Science
    Cytoscape is used by social scientists to:
    Visualize and analyze large social networks of interpersonal relationships
    Assemble social networks from tables and forms
    Gather social interactions from the web by variety of
    web service APIs
    with scripting languages and save it in standard data file formats.
    Cytoscape supports most of the standard file formats
    .
    Calculate network statistics using Apps
    Use with other tools, such as R with sna/
    igraph package or NetworkX, for more advanced
    analysis
    General Complex Network Analysis
    Cytoscape is domain-independent and therefore is a powerful tool for complex network analysis in
    general.
    Calculate statistics for networks by Apps such as NetworkAnalyzer or CentiScaPe
    Find shortest path
    Find clusters by various
    kinds of algorithms
    Use with other tools for more advanced analysis
    Perform advanced network analysis in popular tools, including igraph, Pajek,
    or GraphViz
    and import it to Cytoscape as standard file formats like
    GraphML
    App Development
    Cytoscape is expandable and extensible. Cytoscape has a vibrant App developer community
    and over a hundred Apps developed by third parties.
    Source code is available on GitHub
    Running on OSGi framework
    Develop simple and complex Apps in
    Java
    Clean, Rich Cytoscape Application Programming Interface
    (API)
    Active developer community
    Write simple functions with scripting languages, including Ruby,
    Python, Groovy,
    and JavaScript
    Featured Publications
    Let us know if you've
    pub

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